Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00432Hydantoinase/oxoprolinase; KEGG: efu:HMPREF0351_10234 3.9e-150 hyuA; N-methylhydantoinase; Psort location: Cytoplasmic, score: 7.50. (710 aa)    
Predicted Functional Partners:
D920_00433
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.993
D920_00430
KEGG: zga:zobellia_326 6.6e-45 FAD dependent oxidoreductase; Psort location: CytoplasmicMembrane, score: 9.92.
 
     0.990
D920_00431
Citrate transporter; KEGG: apb:SAR116_0058 2.0e-07 TRAP dicarboxylate transporter subunit DctM; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.987
D920_03100
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.975
D920_03103
Citrate transporter; KEGG: cgo:Corgl_0104 0.0045 PTS system lactose/cellobiose family transporter subunit IIC K02761; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.960
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
  
    0.922
rph
tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
  
  
 0.903
D920_02779
hydroxymethylglutaryl-CoA reductase, degradative; KEGG: efu:HMPREF0351_11072 0. acetyl-CoA acetyltransferase K00054; Psort location: Cytoplasmic, score: 9.95.
  
  
 0.893
mutL
DNA mismatch repair protein; This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a 'molecular matchmaker', a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex.
  
    0.889
D920_00553
KEGG: ebe:B21_01129 5.2e-61 potD; potD, subunit of putrescine/spermidine ABC transporter K11069; Psort location: CytoplasmicMembrane, score: 9.55.
       0.883
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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