Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00435Hypothetical protein; KEGG: efc:EFAU004_00387 8.6e-194 ATP-dependent DNA helicase IV K03657; Psort location: Cytoplasmic, score: 7.50. (732 aa)    
Predicted Functional Partners:
rnmV
Ribonuclease M5; Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step.
       0.925
D920_03036
KEGG: efc:EFAU004_02270 2.0e-116 TatD family hydrolase K03424; Psort location: Cytoplasmic, score: 9.97.
       0.925
D920_02691
KEGG: efc:EFAU004_01302 2.7e-25 4-oxalocrotonate tautomerase K01821.
       0.924
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
       0.924
D920_03038
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.921
rpoB
DNA-directed RNA polymerase, beta subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.913
rpoC
DNA-directed RNA polymerase, beta' subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
   
 
 0.901
coaA
Pantothenate kinase; KEGG: efu:HMPREF0351_10035 4.1e-148 coaA; pantothenate kinase K00867; Psort location: Cytoplasmic, score: 7.50.
       0.900
thrS
threonine--tRNA ligase; Catalyzes the attachment of threonine to tRNA(Thr) in a two- step reaction: L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr).
       0.885
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
       0.879
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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