Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_00464DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 7.50. (304 aa)    
Predicted Functional Partners:
D920_01313
Methyltransferase domain protein; KEGG: efu:HMPREF0351_10904 4.1e-203 methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
 
 
 0.939
D920_00018
Addiction module toxin, RelE/StbE family; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.901
cinA
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.5e-16 fadD; long-chain-fatty-acid--CoA ligase K03743; Belongs to the CinA family.
     
 0.900
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.898
D920_01496
TIM-barrel protein, nifR3 family; Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines; Belongs to the dus family.
  
  
 0.850
D920_01143
Putative toxin-antitoxin system, toxin component; KEGG: bme:BMEI1683 0.0018 zinc-dependent metallopeptidase K01417; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.843
D920_01395
Signal peptidase I; KEGG: efu:HMPREF0351_10760 1.2e-47 spsB; signal peptidase I K13280; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.833
D920_00009
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.831
D920_02113
AMP-binding enzyme; KEGG: efu:HMPREF0351_11403 2.5e-203 acetate--CoA ligase; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.819
D920_00008
Hypothetical protein; KEGG: dan:Dana_GF13333 2.6e-12 GF13333 gene product from transcript GF13333-RA; K00907 myosin-light-chain kinase; Psort location: Cytoplasmic, score: 7.50.
 
     0.816
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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