Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00468Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (315 aa)    
Predicted Functional Partners:
D920_03104
KEGG: efc:EFAU004_00496 3.4e-135 FAD dependent oxidoreductase.
       0.904
D920_01113
Methyltransferase small domain protein; KEGG: efu:HMPREF0351_10036 1.8e-90 rsmC; methyltransferase K00564; Psort location: Cytoplasmic, score: 7.50.
       0.856
msrB
methionine-R-sulfoxide reductase; KEGG: efu:HMPREF0351_10140 2.5e-61 msrB; peptide-methionine (R)-S-oxide reductase K07305; Psort location: Cytoplasmic, score: 7.50.
       0.715
D920_00358
S4 domain protein YaaA.
       0.711
D920_02852
NADH oxidase domain protein; KEGG: efc:EFAU004_00373 1.7e-110 oxidoreductase FAD/FMN-binding protein; Psort location: Cytoplasmic, score: 7.50.
       0.702
D920_02302
EDD domain protein, DegV family; KEGG: mgf:MGF_3873 1.2e-20 DegV-like protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.682
D920_02303
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.682
aspS
aspartate--tRNA ligase; Catalyzes the attachment of L-aspartate to tRNA(Asp) in a two-step reaction: L-aspartate is first activated by ATP to form Asp- AMP and then transferred to the acceptor end of tRNA(Asp). Belongs to the class-II aminoacyl-tRNA synthetase family. Type 1 subfamily.
       0.672
msrA
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.668
msrA-2
Peptide-methionine (S)-S-oxide reductase; Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine.
       0.668
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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