Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00473KEGG: pfr:PFREUD_16470 5.3e-36 ubiG; 3-demethylubiquinone-9 3-methyltransferase; Psort location: Cytoplasmic, score: 7.50. (289 aa)    
Predicted Functional Partners:
D920_01185
Hypothetical protein; KEGG: pfe:PSF113_4044 0.00018 glyoxalase bleomycin resistance protein dioxygenase K04750; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.959
D920_02691
KEGG: efc:EFAU004_01302 2.7e-25 4-oxalocrotonate tautomerase K01821.
       0.911
D920_01777
Hypothetical protein.
       0.904
D920_02202
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.904
pyrE
Orotate phosphoribosyltransferase; Catalyzes the transfer of a ribosyl phosphate group from 5- phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP).
       0.896
pyrF
Orotidine 5'-phosphate decarboxylase; Catalyzes the decarboxylation of orotidine 5'-monophosphate (OMP) to uridine 5'-monophosphate (UMP); Belongs to the OMP decarboxylase family. Type 1 subfamily.
       0.896
D920_00901
KEGG: efu:HMPREF0351_10204 0. aad; aldehyde-alcohol dehydrogenase K04072; Psort location: Cytoplasmic, score: 9.97; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
       0.895
D920_01769
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.895
D920_02773
Glyoxalase family protein; KEGG: efi:OG1RF_12360 1.8e-44 gloA7; lactoylglutathione lyase K07032; Psort location: Cytoplasmic, score: 7.50.
 
     0.895
D920_01490
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.887
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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