D920_00492 protein (Enterococcus faecalis 13SDW01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

D920_00492

Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00. (688 aa)

Predicted Functional Partners:

D920_00491

0.968

D920_01620

0.858

D920_03002

0.795

D920_01420

0.750

D920_02916

0.750

D920_02917

0.750

D920_03043

0.750

D920_01398

0.727

D920_00493

0.721

D920_01787

0.704

Your Current Organism:

Enterococcus faecalis 13SDW01

NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
D920_00491	D920_00492	Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 7.5e-53 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.968
D920_00491	D920_00493	Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 7.5e-53 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.	0.729
D920_00491	D920_01398	Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 7.5e-53 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	Lipoyltransferase and lipoate-protein ligase; KEGG: efu:HMPREF0351_10758 1.5e-150 lplA; lipoate--protein ligase K03800; Psort location: Cytoplasmic, score: 9.97.	0.489
D920_00491	D920_01787	Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 7.5e-53 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: sgg:SGGBAA2069_c11630 5.7e-87 putative ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.796
D920_00491	D920_03002	Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 7.5e-53 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: sgg:SGGBAA2069_c09990 5.0e-63 yclH; putative ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 9.99.	0.544
D920_00492	D920_00491	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 7.5e-53 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.968
D920_00492	D920_00493	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.	0.721
D920_00492	D920_01398	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	Lipoyltransferase and lipoate-protein ligase; KEGG: efu:HMPREF0351_10758 1.5e-150 lplA; lipoate--protein ligase K03800; Psort location: Cytoplasmic, score: 9.97.	0.727
D920_00492	D920_01420	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	Putative lipoprotein releasing system, ATP-binding protein; KEGG: ppo:PPM_p0087 2.5e-36 metN4; methionine import ATP-binding protein metN; Psort location: CytoplasmicMembrane, score: 9.96.	0.750
D920_00492	D920_01620	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 4.3e-41 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 9.51.	0.858
D920_00492	D920_01787	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: sgg:SGGBAA2069_c11630 5.7e-87 putative ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.704
D920_00492	D920_02916	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: snc:HMPREF0837_12256 5.9e-21 ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.750
D920_00492	D920_02917	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; KEGG: xbo:XBJ1_2840 3.3e-11 lolD; transporter of outer membrane lipoproteins (ABC superfamily, atp_bind); K09810 lipoprotein-releasing system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.51.	0.750
D920_00492	D920_03002	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: sgg:SGGBAA2069_c09990 5.0e-63 yclH; putative ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 9.99.	0.795
D920_00492	D920_03043	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	Putative bacteriocin export ABC transporter; KEGG: snc:HMPREF0837_12256 3.0e-40 ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.750
D920_00493	D920_00491	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.	Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 7.5e-53 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.729
D920_00493	D920_00492	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.721
D920_00493	D920_01620	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87.	Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 4.3e-41 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 9.51.	0.429
D920_01398	D920_00491	Lipoyltransferase and lipoate-protein ligase; KEGG: efu:HMPREF0351_10758 1.5e-150 lplA; lipoate--protein ligase K03800; Psort location: Cytoplasmic, score: 9.97.	Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 7.5e-53 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.489
D920_01398	D920_00492	Lipoyltransferase and lipoate-protein ligase; KEGG: efu:HMPREF0351_10758 1.5e-150 lplA; lipoate--protein ligase K03800; Psort location: Cytoplasmic, score: 9.97.	Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.727