Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00495Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (425 aa)    
Predicted Functional Partners:
D920_02071
Hypothetical protein; KEGG: scm:SCHCODRAFT_255708 0.0061 hypothetical protein; K11131 H/ACA ribonucleoprotein complex subunit 4.
       0.991
D920_02284
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.977
D920_02602
KEGG: efc:EFAU004_01141 6.7e-203 alaT; aminotransferase AlaT K14260.
       0.807
D920_00489
Hypothetical protein; KEGG: cpo:COPRO5265_1356 3.0e-40 Mn-containing catalase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.804
D920_00490
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.804
D920_01475
Aminopeptidase; KEGG: efc:EFAU004_02214 2.6e-201 Aminopeptidase C K01372; Psort location: Cytoplasmic, score: 9.67; Belongs to the peptidase C1 family.
       0.802
D920_03122
Glutathione peroxidase; KEGG: efu:HMPREF0351_10469 2.9e-60 gpxA; glutathione peroxidase K00432; Belongs to the glutathione peroxidase family.
       0.765
pcp
Pyroglutamyl-peptidase I; Removes 5-oxoproline from various penultimate amino acid residues except L-proline; Belongs to the peptidase C15 family.
       0.757
rnz
Ribonuclease Z; Zinc phosphodiesterase, which displays some tRNA 3'- processing endonuclease activity. Probably involved in tRNA maturation, by removing a 3'-trailer from precursor tRNA; Belongs to the RNase Z family.
       0.743
D920_02309
KEGG: bya:BANAU_2956 0.00013 ytrA; GntR family transcriptional regulator; Psort location: CytoplasmicMembrane, score: 8.16.
       0.566
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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