Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00511Hypothetical protein; KEGG: hmg:100202415 3.0e-05 similar to predicted protein; K12811 ATP-dependent RNA helicase DDX46/PRP5; Psort location: CytoplasmicMembrane, score: 10.00. (739 aa)    
Predicted Functional Partners:
D920_00509
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
 
   
 0.999
D920_00513
Hypothetical protein.
 
  
 0.998
D920_00510
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
    0.994
D920_00512
CHAP domain protein.
 
   
 0.986
D920_01127
DNA-binding helix-turn-helix protein; KEGG: fnu:FN0522 0.00098 exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.973
D920_01935
DNA-binding helix-turn-helix protein; Psort location: Cytoplasmic, score: 7.50.
 
   
 0.973
D920_01947
Conjugal transfer family protein; Psort location: CytoplasmicMembrane, score: 8.16.
 
    0.965
D920_00960
KEGG: efc:EFAU004_00191 1.7e-117 amino acid ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.96.
  
 
 0.953
D920_01955
KEGG: efu:HMPREF0351_11647 2.9e-115 glnQ2; glutamate ABC superfamily ATP binding cassette transporter, ABC protein; Psort location: CytoplasmicMembrane, score: 8.78.
  
 
 0.953
D920_02482
KEGG: efu:HMPREF0351_11285 3.7e-115 glnQ; glutamate ABC superfamily ATP binding cassette transporter, ABC protein K10041; Psort location: CytoplasmicMembrane, score: 9.96.
  
 
 0.953
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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