Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_00561Putative permease; Psort location: CytoplasmicMembrane, score: 10.00. (305 aa)    
Predicted Functional Partners:
D920_00562
TIGR03943 family protein; Psort location: CytoplasmicMembrane, score: 8.16.
 
  
 0.999
D920_00566
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0297 family.
       0.987
D920_00567
RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
       0.987
D920_02296
Metallo-beta-lactamase domain protein; KEGG: efi:OG1RF_10969 7.1e-112 beta-lactamase; Psort location: Cytoplasmic, score: 7.50.
       0.985
D920_00568
Hypothetical protein; KEGG: say:TPY_3350 1.0e-06 ruvX; Holliday junction resolvase; K07447 putative holliday junction resolvase; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0473 family.
       0.983
rpmG-2
Ribosomal protein L33; KEGG: mmo:MMOB5490 3.9e-08 rpmG; 50S ribosomal protein L33 K02913; Belongs to the bacterial ribosomal protein bL33 family.
     
 0.981
D920_02297
YycH protein.
       0.968
D920_02298
YycH protein; Psort location: Cytoplasmic, score: 7.50.
       0.968
zwf
Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
       0.967
D920_02014
Tex-like protein; KEGG: bur:Bcep18194_A5099 3.1e-166 RNA binding S1 K06959; Psort location: Cytoplasmic, score: 9.97.
       0.967
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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