Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00568Hypothetical protein; KEGG: say:TPY_3350 1.0e-06 ruvX; Holliday junction resolvase; K07447 putative holliday junction resolvase; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0473 family. (109 aa)    
Predicted Functional Partners:
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
     
 0.999
D920_00566
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0297 family.
  
  
 0.998
D920_00567
RNAse H domain protein, YqgF family; Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA; Belongs to the YqgF HJR family.
  
    0.998
D920_00562
TIGR03943 family protein; Psort location: CytoplasmicMembrane, score: 8.16.
       0.985
D920_00561
Putative permease; Psort location: CytoplasmicMembrane, score: 10.00.
       0.983
D920_00604
CvpA family protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.976
D920_00603
Hypothetical protein; KEGG: stz:SPYALAB49_001553 1.5e-08 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 7.50.
 
     0.972
cinA
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.5e-16 fadD; long-chain-fatty-acid--CoA ligase K03743; Belongs to the CinA family.
       0.970
D920_02797
KEGG: mct:MCR_0333 1.5e-15 fur; ferric uptake regulation protein Fur K03711; Psort location: Cytoplasmic, score: 9.97; Belongs to the Fur family.
  
    0.968
D920_01405
Anaerobic ribonucleoside-triphosphate reductase activating protein; Activation of anaerobic ribonucleoside-triphosphate reductase under anaerobic conditions by generation of an organic free radical, using S-adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine.
       0.967
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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