Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_00609ABC transporter, ATP-binding protein; KEGG: lbh:Lbuc_2261 1.9e-88 Fe(3+)-transporting ATPase; Psort location: CytoplasmicMembrane, score: 8.78. (299 aa)    
Predicted Functional Partners:
D920_00610
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.999
uvrC
Excinuclease ABC, C subunit; The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrC both incises the 5' and 3' sides of the lesion. The N-terminal half is responsible for the 3' incision and the C-terminal half is responsible for the 5' incision.
     
 0.989
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.970
D920_00606
Thioredoxin; KEGG: efc:EFAU004_02107 2.2e-46 thioredoxin K03671; Psort location: Cytoplasmic, score: 9.97; Belongs to the thioredoxin family.
 
     0.967
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
       0.965
D920_00176
KEGG: efc:EFAU004_02529 3.6e-140 Ser/Thr protein phosphatase family protein; Psort location: Cytoplasmic, score: 7.50.
       0.960
D920_02100
ABC-2 type transporter; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.960
rph
tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
       0.953
D920_00603
Hypothetical protein; KEGG: stz:SPYALAB49_001553 1.5e-08 seryl-tRNA synthetase; Psort location: Cytoplasmic, score: 7.50.
 
     0.952
D920_00177
Hypothetical protein; KEGG: lru:HMPREF0538_20279 1.0e-54 ppx3; exopolyphosphatase; Psort location: CytoplasmicMembrane, score: 8.16.
       0.946
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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