Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_00624Cof-like hydrolase; KEGG: efc:EFAU004_02086 1.7e-117 HAD superfamily hydrolase K07024; Psort location: Cytoplasmic, score: 7.50. (269 aa)    
Predicted Functional Partners:
D920_00625
HD domain protein; KEGG: mpx:MPD5_0935 2.8e-181 deoxyguanosine triphosphate triphosphohydrolase K06885; Psort location: Cytoplasmic, score: 7.50.
     
 0.998
D920_00626
KEGG: efc:EFAU004_02084 3.8e-81 lipoate-protein ligase A.
     
 0.997
D920_00627
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.989
D920_02673
Hypothetical protein; KEGG: cdb:CDBH8_1365 1.5e-26 putative oxidoreductase.
     
 0.964
D920_02675
Rhodanese-like protein; KEGG: efu:HMPREF0351_11706 1.0e-48 rhodanese family protein; Psort location: CytoplasmicMembrane, score: 9.55.
     
 0.943
rnc
Ribonuclease III; Digests double-stranded RNA. Involved in the processing of primary rRNA transcript to yield the immediate precursors to the large and small rRNAs (23S and 16S). Processes some mRNAs, and tRNAs when they are encoded in the rRNA operon. Processes pre-crRNA and tracrRNA of type II CRISPR loci if present in the organism.
  
  
 0.941
D920_00062
Hypothetical protein; KEGG: dda:Dd703_0763 1.9e-10 PTS system beta-glucoside-specific transporter subunit IIABC; K02755 PTS system, beta-glucosides-specific IIA component; K02756 PTS system, beta-glucosides-specific IIB component K02757; Psort location: CytoplasmicMembrane, score: 9.55.
     
 0.935
D920_00484
KEGG: efu:HMPREF0351_10658 2.2e-291 PTS family sucrose porter component IIABC; K02809 PTS system, sucrose-specific IIB component K02810; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.935
D920_00712
KEGG: efu:HMPREF0351_11993 9.2e-261 bglP2; PTS family glucose/glucoside (glc) porter component IIABC; K02755 PTS system, beta-glucosides-specific IIA component; K02756 PTS system, beta-glucosides-specific IIB component K02757; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.935
D920_01608
KEGG: lpl:lp_0185 1.3e-174 pts1BCA; PTS system, oligosucrose-specific EIIBCA component; K02808 PTS system, sucrose-specific IIA component; K02809 PTS system, sucrose-specific IIB component K02810; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.935
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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