Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00672Hypothetical protein. (120 aa)    
Predicted Functional Partners:
D920_00671
YigZ family protein; KEGG: scp:HMPREF0833_10002 2.6e-50 xaa-Pro dipeptidase; Psort location: Cytoplasmic, score: 7.50.
       0.995
D920_00674
KEGG: thl:TEH_17480 5.7e-94 comFA; putative competence protein ComFA K02240; Psort location: Cytoplasmic, score: 9.97.
       0.994
D920_00675
comF family protein; KEGG: bya:BANAU_3449 5.1e-15 comFC; competence protein ComFC K02242; Psort location: Cytoplasmic, score: 7.50.
       0.994
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
     
 0.993
D920_01002
Oxidoreductase, short chain dehydrogenase/reductase family protein; KEGG: efc:EFAU004_00167 6.6e-93 aldose dehydrogenase K00059; Psort location: Cytoplasmic, score: 9.67.
     
 0.988
secA
Preprotein translocase, SecA subunit; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
  
  
 0.976
D920_01003
Hypothetical protein; KEGG: efu:HMPREF0351_10125 4.5e-30 metG; methionine--tRNA ligase.
       0.967
D920_01313
Methyltransferase domain protein; KEGG: efu:HMPREF0351_10904 4.1e-203 methyltransferase; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.959
prfB
Peptide chain release factor 2; Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA.
   
 
 0.946
D920_00673
Lichenan-specific phosphotransferase enzyme IIB component; KEGG: efc:EFAU004_02044 2.4e-47 PTS system cellobiose-specific transporter subunit IIB K02760; Psort location: CytoplasmicMembrane, score: 8.29.
  
    0.943
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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