Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00675comF family protein; KEGG: bya:BANAU_3449 5.1e-15 comFC; competence protein ComFC K02242; Psort location: Cytoplasmic, score: 7.50. (228 aa)    
Predicted Functional Partners:
D920_00674
KEGG: thl:TEH_17480 5.7e-94 comFA; putative competence protein ComFA K02240; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.999
D920_00538
Riboflavin biosynthesis protein RibD; Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'- phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)-pyrimidinedione 5'- phosphate; In the C-terminal section; belongs to the HTP reductase family.
     
 0.998
D920_02858
KEGG: apb:SAR116_0616 9.3e-39 DNA protecting protein DprA K04096; Psort location: Cytoplasmic, score: 7.50.
 
 
 0.997
hpf
Ribosomal subunit interface protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.995
D920_00672
Hypothetical protein.
       0.994
D920_02533
ComEC/Rec2-like protein; KEGG: apb:SAR116_0501 1.0e-06 DNA uptake protein ComEC K02238; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.992
D920_02532
Metallo-beta-lactamase domain protein; KEGG: zga:zobellia_1566 0.0040 metallohydrolase; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.990
D920_02535
comEA protein; KEGG: has:Halsa_0780 3.1e-08 glycogen/starch synthase K00703; Psort location: CytoplasmicMembrane, score: 9.96.
  
  
 0.987
D920_00186
KEGG: pfe:PSF113_0439 1.7e-32 xcpR; protein XcpR K02454; Psort location: Cytoplasmic, score: 9.89.
  
  
 0.986
D920_00187
Bacterial type II secretion system protein F domain protein; KEGG: apb:SAR116_2517 0.00015 type II secretion system PilC K02653; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.985
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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