STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
mntHMetal ion transporter, metal ion transporter family; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family. (530 aa)    
Predicted Functional Partners:
D920_00771
SNARE-like domain protein; KEGG: sds:SDEG_0792 2.8e-37 membrane-associated alkaline phosphatase; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.991
rimM
16S rRNA processing protein RimM; An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes; Belongs to the RimM family.
       0.991
trmD
tRNA (guanine-N(1)-)-methyltransferase; Specifically methylates guanosine-37 in various tRNAs. Belongs to the RNA methyltransferase TrmD family.
       0.991
D920_00770
KEGG: efc:EFAU004_01774 4.6e-243 glycerophosphodiester phosphodiesterase family protein K01126; Psort location: CytoplasmicMembrane, score: 10.00.
       0.984
D920_01346
Iron dependent repressor, DNA binding domain protein; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.969
rplS
Ribosomal protein L19; This protein is located at the 30S-50S ribosomal subunit interface and may play a role in the structure and function of the aminoacyl-tRNA binding site.
  
    0.969
D920_03112
Metal ion ABC transporter, permease protein; KEGG: pfe:PSF113_0030 1.3e-30 znuB; protein ZnuB K09816; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.962
D920_03113
Putative manganese transport system ATP-binding protein MntA; KEGG: efu:HMPREF0351_10498 1.2e-79 ABC superfamily ATP binding cassette transporter, ABC protein; Psort location: CytoplasmicMembrane, score: 9.96.
  
  
 0.959
pheT
KEGG: efu:HMPREF0351_11283 0. pheT3; phenylalanine--tRNA ligase beta subunit K01890; Psort location: Cytoplasmic, score: 9.97; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.954
D920_00707
Hypothetical protein; KEGG: lki:LKI_01225 2.0e-20 LexA repressor K09976; Psort location: CytoplasmicMembrane, score: 9.55.
       0.952
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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