Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00724YqeY-like protein; KEGG: efu:HMPREF0351_11982 6.1e-58 gatB2; glutaminyl-tRNA synthase b subunit K09117; Psort location: Cytoplasmic, score: 7.50. (138 aa)    
Predicted Functional Partners:
rpsU
Ribosomal protein S21; KEGG: sew:SeSA_A3399 3.0e-10 rpsU; 30S ribosomal protein S21 K02970; Psort location: Cytoplasmic, score: 9.67; Belongs to the bacterial ribosomal protein bS21 family.
  
  
 0.999
D920_00722
Transcriptional regulator, Fur family; KEGG: mct:MCR_0333 4.4e-09 fur; ferric uptake regulation protein Fur K03711; Psort location: Cytoplasmic, score: 7.50; Belongs to the Fur family.
  
    0.994
D920_00721
Hypothetical protein; Bifunctional serine/threonine kinase and phosphorylase involved in the regulation of the pyruvate, phosphate dikinase (PPDK) by catalyzing its phosphorylation/dephosphorylation.
       0.993
era
Ribosome biogenesis GTPase Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
  
    0.992
D920_02956
PhoH-like protein; KEGG: ttu:TERTU_3875 7.8e-74 phosphate starvation-inducible protein PhoH family protein, ATPase K06217; Psort location: Cytoplasmic, score: 9.97.
     
 0.992
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.991
D920_02953
Putative undecaprenol kinase; KEGG: efc:EFAU004_01992 5.3e-52 diacylglycerol kinase K00901; Psort location: CytoplasmicMembrane, score: 10.00.
       0.991
ybeY
Translation metalloprotein YbeY; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA.
       0.991
D920_02955
7TM-HD extracellular; KEGG: bmq:BMQ_4552 6.4e-111 metal-dependent phosphohydrolase K07037; Psort location: CytoplasmicMembrane, score: 10.00.
       0.991
D920_00181
Protein hit; KEGG: efc:EFAU004_02524 6.1e-58 histidine triad protein K02503; Psort location: Cytoplasmic, score: 7.50.
     
 0.974
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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