Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
D920_00753Hypothetical protein. (47 aa)    
Predicted Functional Partners:
D920_00752
Cof-like hydrolase; KEGG: efc:EFAU004_01795 1.6e-114 HAD superfamily hydrolase K07024; Psort location: Cytoplasmic, score: 7.50.
       0.645
D920_00749
ATPase/histidine kinase/DNA gyrase B/HSP90 domain protein; KEGG: efc:EFAU004_01792 2.0e-217 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.449
D920_00750
Putative alkaline phosphatase synthesis transcriptional regulatory protein PhoP; KEGG: pmg:P9301_12431 3.1e-38 phoB; two-component response regulator, phosphate K07657; Psort location: Cytoplasmic, score: 9.97.
       0.449
D920_00751
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.35.
       0.449
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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