Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00816Hypothetical protein; KEGG: ctp:CTRG_05827 4.1e-06 hypothetical protein; K01183 chitinase. (239 aa)    
Predicted Functional Partners:
D920_00009
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.740
lysS
lysine--tRNA ligase; KEGG: efc:EFAU004_02596 1.4e-248 lysS; lysyl-tRNA synthetase K04567; Psort location: Cytoplasmic, score: 10.00; Belongs to the class-II aminoacyl-tRNA synthetase family.
       0.711
D920_00008
Hypothetical protein; KEGG: dan:Dana_GF13333 2.6e-12 GF13333 gene product from transcript GF13333-RA; K00907 myosin-light-chain kinase; Psort location: Cytoplasmic, score: 7.50.
 
     0.704
D920_00132
Fic family protein; KEGG: dan:Dana_GF18177 0.0014 GF18177 gene product from transcript GF18177-RA; K01887 arginyl-tRNA synthetase; Psort location: Cytoplasmic, score: 7.50.
       0.699
D920_00996
KEGG: efc:EFAU004_00172 9.1e-64 DNA alkylation repair protein.
       0.682
D920_01853
KEGG: efc:EFAU004_02486 1.0e-103 HAD superfamily hydrolase K07025; Psort location: Cytoplasmic, score: 7.50.
       0.666
D920_00817
Bacterial membrane protein YfhO; KEGG: bcc:BCc_109 0.00012 nuoN; NADH dehydrogenase I chain N K00343; Psort location: CytoplasmicMembrane, score: 10.00.
       0.660
D920_01804
Hydrolase, alpha/beta domain protein; KEGG: cbj:H04402_00528 9.0e-57 lysophospholipase; Psort location: CytoplasmicMembrane, score: 8.16.
       0.659
D920_00258
Hypothetical protein; Psort location: Extracellular, score: 8.91.
       0.649
D920_02969
Hypothetical protein; KEGG: phu:Phum_PHUM547410 2.0e-08 papilin, putative; Psort location: Cellwall, score: 9.21.
       0.649
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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