Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
D920_00822KEGG: apb:SAR116_0757 4.6e-05 universal stress protein family protein; Psort location: Cytoplasmic, score: 7.50. (154 aa)    
Predicted Functional Partners:
D920_00821
tRNA binding domain protein; KEGG: efu:HMPREF0351_10247 8.0e-88 pheT; phenylalanine--tRNA ligase beta subunit K06878; Psort location: Cytoplasmic, score: 9.97; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
     
 0.995
D920_00823
Thioredoxin; KEGG: lru:HMPREF0538_20267 6.6e-29 trxA; thioredoxin; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.995
D920_00824
KEGG: efc:EFAU004_00277 2.1e-183 glutamyl aminopeptidase K01261.
     
 0.994
D920_00825
Hypothetical protein; KEGG: bmq:BMQ_4832 6.9e-11 peptidase; Psort location: CytoplasmicMembrane, score: 8.16.
  
    0.990
mntH
Metal ion transporter, metal ion transporter family; H(+)-stimulated, divalent metal cation uptake system. Belongs to the NRAMP family.
  
  
 0.966
codY
GTP-sensing transcriptional pleiotropic repressor CodY; DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor; Belongs to the CodY family.
       0.960
gatB
aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit; Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp-tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl- tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp- tRNA(Asn) or phospho-Glu-tRNA(Gln); Belongs to the GatB/GatE family. GatB subfamily.
     
 0.950
D920_01967
Pyruvate synthase; KEGG: efu:HMPREF0351_11628 0. nifJ; pyruvate synthase K03737; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.942
D920_01579
Nitroreductase family protein; KEGG: efu:HMPREF0351_12619 1.3e-89 NADH dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.941
D920_00999
BioY family protein; KEGG: lml:lmo4a_0615 6.5e-54 BioY family protein K03523; Psort location: CytoplasmicMembrane, score: 10.00.
       0.935
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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