Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00836LPXTG-motif protein cell wall anchor domain protein; Psort location: Cellwall, score: 9.26. (103 aa)    
Predicted Functional Partners:
D920_00835
Hypothetical protein; KEGG: efi:OG1RF_12454 9.6e-07 ubiD2; UbiD family decarboxylase; Psort location: Extracellular, score: 9.13.
       0.773
D920_00837
Hypothetical protein; KEGG: mbu:Mbur_0710 0.0036 acetolactate synthase 3 catalytic subunit K01652.
       0.732
D920_00838
Hypothetical protein; KEGG: efi:OG1RF_12454 7.2e-12 ubiD2; UbiD family decarboxylase.
       0.591
D920_00839
Hypothetical protein; KEGG: efi:OG1RF_12452 9.2e-16 ubiD; UbiD family decarboxylase.
       0.534
D920_00833
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 8.16.
       0.404
D920_00834
Poly-beta-1,6 N-acetyl-D-glucosamine synthase; KEGG: bmd:BMD_3824 1.3e-89 family 2 glycosyl transferase K11936; Psort location: CytoplasmicMembrane, score: 10.00.
       0.404
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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