D920_00860 protein (Enterococcus faecalis 13SDW01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

D920_00860

Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00. (434 aa)

Predicted Functional Partners:

D920_00859

0.992

D920_01425

0.965

D920_01794

0.955

D920_02237

0.942

D920_01792

0.894

D920_00251

0.877

D920_01810

0.877

D920_02217

0.877

D920_02761

0.877

D920_02849

0.877

Your Current Organism:

Enterococcus faecalis 13SDW01

NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
D920_00251	D920_00860	Response regulator receiver domain protein; KEGG: sgg:SGGBAA2069_c19630 5.1e-15 fasA1; response regulator; Psort location: CytoplasmicMembrane, score: 8.16.	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	0.877
D920_00251	D920_01794	Response regulator receiver domain protein; KEGG: sgg:SGGBAA2069_c19630 5.1e-15 fasA1; response regulator; Psort location: CytoplasmicMembrane, score: 8.16.	KEGG: efc:EFAU004_00453 4.7e-67 accessory regulator agrBfs protein K07813; Psort location: CytoplasmicMembrane, score: 10.00.	0.910
D920_00859	D920_00860	LytTr DNA-binding domain protein; KEGG: ppo:PPM_2376 2.1e-18 lytTr; chemotaxis response regulator protein-glutamate methylesterase 1; Psort location: Cytoplasmic, score: 9.97.	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	0.992
D920_00859	D920_01794	LytTr DNA-binding domain protein; KEGG: ppo:PPM_2376 2.1e-18 lytTr; chemotaxis response regulator protein-glutamate methylesterase 1; Psort location: Cytoplasmic, score: 9.97.	KEGG: efc:EFAU004_00453 4.7e-67 accessory regulator agrBfs protein K07813; Psort location: CytoplasmicMembrane, score: 10.00.	0.870
D920_00860	D920_00251	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	Response regulator receiver domain protein; KEGG: sgg:SGGBAA2069_c19630 5.1e-15 fasA1; response regulator; Psort location: CytoplasmicMembrane, score: 8.16.	0.877
D920_00860	D920_00859	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	LytTr DNA-binding domain protein; KEGG: ppo:PPM_2376 2.1e-18 lytTr; chemotaxis response regulator protein-glutamate methylesterase 1; Psort location: Cytoplasmic, score: 9.97.	0.992
D920_00860	D920_01425	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	LytTr DNA-binding domain protein; KEGG: ppo:PPM_2376 1.9e-15 lytTr; chemotaxis response regulator protein-glutamate methylesterase 1; Psort location: Cytoplasmic, score: 9.97.	0.965
D920_00860	D920_01792	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	Putative accessory protein regulator protein A; KEGG: sgg:SGGBAA2069_c19630 1.7e-23 fasA1; response regulator; Psort location: Cytoplasmic, score: 9.97.	0.894
D920_00860	D920_01794	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: efc:EFAU004_00453 4.7e-67 accessory regulator agrBfs protein K07813; Psort location: CytoplasmicMembrane, score: 10.00.	0.955
D920_00860	D920_01810	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: sgg:SGGBAA2069_c05640 1.7e-07 fasA; Chemotaxis response regulator protein K07707; Psort location: Cytoplasmic, score: 7.50.	0.877
D920_00860	D920_02217	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	LytTr DNA-binding domain protein; KEGG: sgg:SGGBAA2069_c19630 1.9e-15 fasA1; response regulator; Psort location: Cytoplasmic, score: 9.67.	0.877
D920_00860	D920_02237	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; KEGG: nth:Nther_2685 1.7e-23 monosaccharide-transporting ATPase K10439.	0.942
D920_00860	D920_02761	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	LytTr DNA-binding domain protein; KEGG: sgg:SGGBAA2069_c19630 6.3e-17 fasA1; response regulator; Psort location: Cytoplasmic, score: 9.97.	0.877
D920_00860	D920_02849	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	LytTr DNA-binding domain protein; KEGG: sgg:SGGBAA2069_c19630 1.4e-06 fasA1; response regulator; Psort location: Cytoplasmic, score: 7.50.	0.877
D920_01425	D920_00860	LytTr DNA-binding domain protein; KEGG: ppo:PPM_2376 1.9e-15 lytTr; chemotaxis response regulator protein-glutamate methylesterase 1; Psort location: Cytoplasmic, score: 9.97.	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	0.965
D920_01425	D920_01794	LytTr DNA-binding domain protein; KEGG: ppo:PPM_2376 1.9e-15 lytTr; chemotaxis response regulator protein-glutamate methylesterase 1; Psort location: Cytoplasmic, score: 9.97.	KEGG: efc:EFAU004_00453 4.7e-67 accessory regulator agrBfs protein K07813; Psort location: CytoplasmicMembrane, score: 10.00.	0.870
D920_01792	D920_00860	Putative accessory protein regulator protein A; KEGG: sgg:SGGBAA2069_c19630 1.7e-23 fasA1; response regulator; Psort location: Cytoplasmic, score: 9.97.	Hypothetical protein; KEGG: scp:HMPREF0833_10274 1.1e-35 sensor histidine kinase; Psort location: CytoplasmicMembrane, score: 10.00.	0.894
D920_01792	D920_01794	Putative accessory protein regulator protein A; KEGG: sgg:SGGBAA2069_c19630 1.7e-23 fasA1; response regulator; Psort location: Cytoplasmic, score: 9.97.	KEGG: efc:EFAU004_00453 4.7e-67 accessory regulator agrBfs protein K07813; Psort location: CytoplasmicMembrane, score: 10.00.	0.959
D920_01794	D920_00251	KEGG: efc:EFAU004_00453 4.7e-67 accessory regulator agrBfs protein K07813; Psort location: CytoplasmicMembrane, score: 10.00.	Response regulator receiver domain protein; KEGG: sgg:SGGBAA2069_c19630 5.1e-15 fasA1; response regulator; Psort location: CytoplasmicMembrane, score: 8.16.	0.910
D920_01794	D920_00859	KEGG: efc:EFAU004_00453 4.7e-67 accessory regulator agrBfs protein K07813; Psort location: CytoplasmicMembrane, score: 10.00.	LytTr DNA-binding domain protein; KEGG: ppo:PPM_2376 2.1e-18 lytTr; chemotaxis response regulator protein-glutamate methylesterase 1; Psort location: Cytoplasmic, score: 9.97.	0.870