Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00861Hypothetical protein; KEGG: abt:ABED_1996 0.0088 peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00. (242 aa)    
Predicted Functional Partners:
D920_00863
ABC-2 type transporter; Psort location: CytoplasmicMembrane, score: 10.00.
       0.984
D920_00864
KEGG: rdn:HMPREF0733_11092 9.3e-55 ABC transporter ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 8.78.
       0.980
D920_00862
ABC transporter, ATP-binding protein; KEGG: cle:Clole_3263 7.9e-26 phosphonate-transporting ATPase K09687; Psort location: CytoplasmicMembrane, score: 9.51.
       0.940
D920_00399
Putative bacitracin ABC transporter, ATP-binding protein BcrA; KEGG: bya:BANAU_3847 4.6e-53 mrsF; ATP-binding protein MrsF K09687; Psort location: CytoplasmicMembrane, score: 8.78.
       0.750
D920_01097
ABC transporter, ATP-binding protein; KEGG: snv:SPNINV200_06240 1.0e-55 ccmA; heme exporter protein A (cytochrome C-type biogenesis protein) K09687; Psort location: CytoplasmicMembrane, score: 8.78.
       0.750
D920_01151
KEGG: efu:HMPREF0351_12646 2.1e-103 bcrA; bacitracin ABC superfamily ATP binding cassette transporter, ABC protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.
       0.750
D920_00976
KEGG: efc:EFAU004_01514 1.6e-80 CAAX amino terminal protease family protein K07052; Psort location: CytoplasmicMembrane, score: 10.00.
       0.611
D920_00324
ABC-2 type transporter; KEGG: phu:Phum_PHUM433370 3.1e-07 ABC transporter, putative; Psort location: CytoplasmicMembrane, score: 10.00.
       0.580
D920_01177
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.580
D920_01178
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.580
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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