D920_00863 protein (Enterococcus faecalis 13SDW01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

D920_00863

ABC-2 type transporter; Psort location: CytoplasmicMembrane, score: 10.00. (257 aa)

Predicted Functional Partners:

D920_00864

0.999

D920_00861

0.984

D920_00862

0.976

D920_01579

0.963

D920_02101

0.916

D920_00399

0.914

D920_01151

0.913

D920_00323

0.905

D920_01176

0.905

D920_01183

0.905

Your Current Organism:

Enterococcus faecalis 13SDW01

NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
D920_00323	D920_00399	KEGG: fal:FRAAL2549 2.1e-57 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.	Putative bacitracin ABC transporter, ATP-binding protein BcrA; KEGG: bya:BANAU_3847 4.6e-53 mrsF; ATP-binding protein MrsF K09687; Psort location: CytoplasmicMembrane, score: 8.78.	0.523
D920_00323	D920_00862	KEGG: fal:FRAAL2549 2.1e-57 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.	ABC transporter, ATP-binding protein; KEGG: cle:Clole_3263 7.9e-26 phosphonate-transporting ATPase K09687; Psort location: CytoplasmicMembrane, score: 9.51.	0.574
D920_00323	D920_00863	KEGG: fal:FRAAL2549 2.1e-57 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.	ABC-2 type transporter; Psort location: CytoplasmicMembrane, score: 10.00.	0.905
D920_00323	D920_01151	KEGG: fal:FRAAL2549 2.1e-57 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.	KEGG: efu:HMPREF0351_12646 2.1e-103 bcrA; bacitracin ABC superfamily ATP binding cassette transporter, ABC protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.	0.535
D920_00323	D920_01579	KEGG: fal:FRAAL2549 2.1e-57 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.	Nitroreductase family protein; KEGG: efu:HMPREF0351_12619 1.3e-89 NADH dehydrogenase; Psort location: Cytoplasmic, score: 9.97.	0.843
D920_00399	D920_00323	Putative bacitracin ABC transporter, ATP-binding protein BcrA; KEGG: bya:BANAU_3847 4.6e-53 mrsF; ATP-binding protein MrsF K09687; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: fal:FRAAL2549 2.1e-57 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.	0.523
D920_00399	D920_00861	Putative bacitracin ABC transporter, ATP-binding protein BcrA; KEGG: bya:BANAU_3847 4.6e-53 mrsF; ATP-binding protein MrsF K09687; Psort location: CytoplasmicMembrane, score: 8.78.	Hypothetical protein; KEGG: abt:ABED_1996 0.0088 peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.	0.750
D920_00399	D920_00863	Putative bacitracin ABC transporter, ATP-binding protein BcrA; KEGG: bya:BANAU_3847 4.6e-53 mrsF; ATP-binding protein MrsF K09687; Psort location: CytoplasmicMembrane, score: 8.78.	ABC-2 type transporter; Psort location: CytoplasmicMembrane, score: 10.00.	0.914
D920_00399	D920_00864	Putative bacitracin ABC transporter, ATP-binding protein BcrA; KEGG: bya:BANAU_3847 4.6e-53 mrsF; ATP-binding protein MrsF K09687; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: rdn:HMPREF0733_11092 9.3e-55 ABC transporter ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 8.78.	0.839
D920_00399	D920_01176	Putative bacitracin ABC transporter, ATP-binding protein BcrA; KEGG: bya:BANAU_3847 4.6e-53 mrsF; ATP-binding protein MrsF K09687; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: fal:FRAAL2549 1.9e-56 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.99.	0.519
D920_00399	D920_01183	Putative bacitracin ABC transporter, ATP-binding protein BcrA; KEGG: bya:BANAU_3847 4.6e-53 mrsF; ATP-binding protein MrsF K09687; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: fal:FRAAL2549 9.3e-55 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.	0.525
D920_00399	D920_01579	Putative bacitracin ABC transporter, ATP-binding protein BcrA; KEGG: bya:BANAU_3847 4.6e-53 mrsF; ATP-binding protein MrsF K09687; Psort location: CytoplasmicMembrane, score: 8.78.	Nitroreductase family protein; KEGG: efu:HMPREF0351_12619 1.3e-89 NADH dehydrogenase; Psort location: Cytoplasmic, score: 9.97.	0.840
D920_00399	D920_02101	Putative bacitracin ABC transporter, ATP-binding protein BcrA; KEGG: bya:BANAU_3847 4.6e-53 mrsF; ATP-binding protein MrsF K09687; Psort location: CytoplasmicMembrane, score: 8.78.	Putative ABC transporter, ATP-binding protein SagG; KEGG: bao:BAMF_3184 4.9e-81 RBAM_030540; multidrug ABC transporter ATPase K09687; Psort location: CytoplasmicMembrane, score: 8.78.	0.527
D920_00861	D920_00399	Hypothetical protein; KEGG: abt:ABED_1996 0.0088 peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.	Putative bacitracin ABC transporter, ATP-binding protein BcrA; KEGG: bya:BANAU_3847 4.6e-53 mrsF; ATP-binding protein MrsF K09687; Psort location: CytoplasmicMembrane, score: 8.78.	0.750
D920_00861	D920_00862	Hypothetical protein; KEGG: abt:ABED_1996 0.0088 peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: cle:Clole_3263 7.9e-26 phosphonate-transporting ATPase K09687; Psort location: CytoplasmicMembrane, score: 9.51.	0.940
D920_00861	D920_00863	Hypothetical protein; KEGG: abt:ABED_1996 0.0088 peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.	ABC-2 type transporter; Psort location: CytoplasmicMembrane, score: 10.00.	0.984
D920_00861	D920_00864	Hypothetical protein; KEGG: abt:ABED_1996 0.0088 peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: rdn:HMPREF0733_11092 9.3e-55 ABC transporter ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 8.78.	0.980
D920_00861	D920_01151	Hypothetical protein; KEGG: abt:ABED_1996 0.0088 peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: efu:HMPREF0351_12646 2.1e-103 bcrA; bacitracin ABC superfamily ATP binding cassette transporter, ABC protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.	0.750
D920_00862	D920_00323	ABC transporter, ATP-binding protein; KEGG: cle:Clole_3263 7.9e-26 phosphonate-transporting ATPase K09687; Psort location: CytoplasmicMembrane, score: 9.51.	KEGG: fal:FRAAL2549 2.1e-57 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.	0.574
D920_00862	D920_00861	ABC transporter, ATP-binding protein; KEGG: cle:Clole_3263 7.9e-26 phosphonate-transporting ATPase K09687; Psort location: CytoplasmicMembrane, score: 9.51.	Hypothetical protein; KEGG: abt:ABED_1996 0.0088 peptidase; K02654 leader peptidase (prepilin peptidase) / N-methyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.	0.940