Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00892Transcriptional regulator, AraC family; KEGG: bxh:BAXH7_04219 1.9e-15 adaA; methylphosphotriester-DNA alkyltransferase and transcriptional regulator (AraC/XylS family) K13530; Psort location: Cytoplasmic, score: 9.97. (299 aa)    
Predicted Functional Partners:
D920_00901
KEGG: efu:HMPREF0351_10204 0. aad; aldehyde-alcohol dehydrogenase K04072; Psort location: Cytoplasmic, score: 9.97; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
     
 0.952
birA
biotin--[acetyl-CoA-carboxylase] ligase; Acts both as a biotin--[acetyl-CoA-carboxylase] ligase and a repressor; Belongs to the biotin--protein ligase family.
     
 0.904
D920_02909
Cupin domain protein; KEGG: bst:GYO_2934 5.4e-34 pcaC; 4-carboxymuconolactone decarboxylase; Psort location: Cytoplasmic, score: 7.50.
  
 
 0.895
rhaA
L-rhamnose isomerase; KEGG: efu:HMPREF0351_10213 4.2e-201 rhaA; L-rhamnose isomerase K01813; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.882
D920_00888
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
     
 0.865
D920_00887
Lactaldehyde reductase; KEGG: efc:EFAU004_00251 1.5e-164 fucO; Lactaldehyde reductase K00048; Psort location: Cytoplasmic, score: 9.97.
 
   
 0.860
rhaB
Rhamnulokinase; Involved in the catabolism of L-rhamnose (6-deoxy-L-mannose). Catalyzes the transfer of the gamma-phosphate group from ATP to the 1- hydroxyl group of L-rhamnulose to yield L-rhamnulose 1-phosphate. Belongs to the rhamnulokinase family.
  
  
 0.860
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.850
D920_01185
Hypothetical protein; KEGG: pfe:PSF113_4044 0.00018 glyoxalase bleomycin resistance protein dioxygenase K04750; Psort location: Cytoplasmic, score: 7.50.
  
    0.836
D920_02908
KEGG: lbr:LVIS_1969 6.4e-47 gamma-carboxymuconolactone decarboxylase subunit-like protein; K01607 4-carboxymuconolactone decarboxylase; Psort location: Cytoplasmic, score: 7.50.
     
 0.829
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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