Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00894KEGG: efc:EFAU004_00244 2.1e-103 AP endonuclease; Psort location: Cytoplasmic, score: 7.50. (286 aa)    
Predicted Functional Partners:
D920_00898
Glycosyl hydrolase, family 88; KEGG: efu:HMPREF0351_10205 1.1e-193 glycosyl hydrolase; K15532 unsaturated rhamnogalacturonyl hydrolase; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.998
D920_00895
TRAP transporter, DctM subunit; KEGG: apb:SAR116_0249 2.3e-67 TRAP dicarboxylate transporter subunit DctM; Psort location: CytoplasmicMembrane, score: 10.00.
       0.997
D920_00896
TRAP transporter, DctQ-like membrane protein; KEGG: apb:SAR116_0248 1.5e-06 C4-dicarboxylate transport system, permease small protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.996
D920_00897
TRAP transporter solute receptor, DctP family; KEGG: cnc:CNE_2c21430 6.2e-26 dhaT; 1,3-propanediol dehydrogenase DhaT; Psort location: Cytoplasmic, score: 7.50.
  
    0.994
D920_00901
KEGG: efu:HMPREF0351_10204 0. aad; aldehyde-alcohol dehydrogenase K04072; Psort location: Cytoplasmic, score: 9.97; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
  
  
 0.974
kduI
4-deoxy-L-threo-5-hexosulose-uronate ketol-isomerase; Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate. Belongs to the KduI family.
 
   
 0.964
D920_02178
Glycosyl hydrolase, family 88; KEGG: efu:HMPREF0351_12481 7.2e-174 glycosyl hydrolase; K15532 unsaturated rhamnogalacturonyl hydrolase; Psort location: Cytoplasmic, score: 9.67.
 
  
 0.959
D920_00888
L-rhamnose 1-epimerase; Involved in the anomeric conversion of L-rhamnose.
 
  
 0.953
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
     
 0.944
D920_02185
KEGG: efu:HMPREF0351_12488 2.6e-176 mannitol dehydrogenase K00041; Psort location: Cytoplasmic, score: 9.95.
 
   
 0.933
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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