Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00932Hypothetical protein. (52 aa)    
Predicted Functional Partners:
D920_00929
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.661
D920_00930
KEGG: apb:SAR116_1997 6.7e-13 YaiI/YqxD family protein K09768; Belongs to the UPF0178 family.
       0.661
D920_00931
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.661
D920_00928
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.571
ddl
D-ala D-ala ligase protein; Cell wall formation; Belongs to the D-alanine--D-alanine ligase family.
       0.522
D920_00933
KEGG: efc:EFAU004_00212 2.6e-43 GNAT family acetyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.491
D920_00934
SNARE-like domain protein; KEGG: sds:SDEG_0792 1.2e-27 membrane-associated alkaline phosphatase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.465
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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