Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00940MATE efflux family protein; KEGG: ssr:SALIVB_2015 2.3e-21 queuine tRNA-ribosyltransferase; Psort location: CytoplasmicMembrane, score: 10.00. (463 aa)    
Predicted Functional Partners:
D920_00941
Hypothetical protein.
  
    0.994
D920_02372
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
  
    0.976
gshAB
Glutamate--cysteine ligase/gamma-glutamylcysteine synthetase; Synthesizes glutathione from L-glutamate and L-cysteine via gamma-L-glutamyl-L-cysteine; In the N-terminal section; belongs to the glutamate--cysteine ligase type 1 family. Type 2 subfamily.
     
 0.973
D920_02371
Hypothetical protein; KEGG: ppo:PPM_1316 1.0e-23 bI1; putative intron-encoded endonuclease.
  
    0.973
D920_01243
DNA-binding regulatory protein, YebC/PmpR family; KEGG: efi:OG1RF_12169 2.6e-105 yeeN; glucose-1-phosphate adenylyltransferase; Psort location: Cytoplasmic, score: 7.50.
     
 0.972
rplY
Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
     
 0.971
D920_02941
Chloride transporter, ClC family; KEGG: cpr:CPR_1400 4.8e-19 chloride channel protein K01529; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.971
D920_01579
Nitroreductase family protein; KEGG: efu:HMPREF0351_12619 1.3e-89 NADH dehydrogenase; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.965
cinA
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.5e-16 fadD; long-chain-fatty-acid--CoA ligase K03743; Belongs to the CinA family.
 
   
 0.963
D920_02547
Inositol monophosphatase family protein; KEGG: efu:HMPREF0351_11230 5.7e-87 suhB; inositol-phosphate phosphatase K01092; Psort location: Cytoplasmic, score: 7.50.
     
 0.961
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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