Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00941Hypothetical protein. (107 aa)    
Predicted Functional Partners:
D920_00940
MATE efflux family protein; KEGG: ssr:SALIVB_2015 2.3e-21 queuine tRNA-ribosyltransferase; Psort location: CytoplasmicMembrane, score: 10.00.
  
    0.994
rplY
Ribosomal protein L25, Ctc-form; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
       0.991
D920_01279
Hypothetical protein; KEGG: mpu:MYPU_1770 4.5e-25 cysS; cysteinyl-tRNA synthetase (cysteine--tRNA ligase) K01883; Psort location: Cytoplasmic, score: 9.97; Belongs to the UPF0374 family.
 
     0.976
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
     
 0.970
D920_00938
Pseudouridylate synthase; KEGG: efc:EFAU004_00207 2.2e-78 16S rRNA pseudouridine synthase A K06183; Psort location: Cytoplasmic, score: 9.67; Belongs to the pseudouridine synthase RsuA family.
       0.961
D920_00761
YbaK/EbsC protein; KEGG: bya:BANAU_2580 6.0e-28 yjdI; prolyl-tRNA synthetase K03976; Psort location: Cytoplasmic, score: 7.50; Belongs to the prolyl-tRNA editing family. YbaK/EbsC subfamily.
       0.958
D920_00937
HAD hydrolase family; KEGG: efu:HMPREF0351_10168 2.2e-92 HAD-superfamily hydrolase K01560; Psort location: Cytoplasmic, score: 7.50.
 
     0.927
D920_00129
Hypothetical protein.
     
 0.904
udk
Uridine kinase; KEGG: ehr:EHR_03945 2.7e-103 uridine/cytidine kinase; Psort location: Cytoplasmic, score: 9.97.
       0.902
D920_01282
KEGG: efc:EFAU004_01343 1.9e-205 23S rRNA (uracil-5-)-methyltransferase; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
  
    0.901
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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