Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_00962KEGG: eci:UTI89_C0120 2.1e-103 aroP; aromatic amino acid transporter K11734; Psort location: CytoplasmicMembrane, score: 10.00. (462 aa)    
Predicted Functional Partners:
D920_03004
Beta-aspartyl peptidase; Catalyzes the hydrolytic cleavage of a subset of L- isoaspartyl (L-beta-aspartyl) dipeptides. Used to degrade proteins damaged by L-isoaspartyl residues formation. Belongs to the peptidase M38 family.
  
  
 0.942
D920_00960
KEGG: efc:EFAU004_00191 1.7e-117 amino acid ABC transporter ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.96.
  
  
 0.935
D920_01472
L-asparaginase, type II; KEGG: efu:HMPREF0351_12194 2.7e-142 ansA; L-asparaginase K01424; Psort location: Cytoplasmic, score: 9.67.
     
 0.929
guaA
GMP synthase domain protein; Catalyzes the synthesis of GMP from XMP.
     
 0.927
nadE
NAD+ synthase; Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses ammonia as a nitrogen source; Belongs to the NAD synthetase family.
     
 0.920
D920_00959
ABC transporter, permease protein; KEGG: sgg:SGGBAA2069_c14260 1.1e-56 glnH; amino acid ABC transporter amino acid-binding/permease K02029:K02030; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.916
D920_01179
Nicotinate phosphoribosyltransferase; Catalyzes the first step in the biosynthesis of NAD from nicotinic acid, the ATP-dependent synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate. Belongs to the NAPRTase family.
     
 0.908
D920_02398
Fibronectin-binding protein A; Psort location: Cytoplasmic, score: 7.50.
     
 0.902
D920_00922
Alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
  
  
 0.898
greA
Transcription elongation factor GreA; Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus. GreA releases sequences of 2 to 3 nucleotides.
     
 0.897
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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