Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
Databases
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[Homology]
Score
D920_00966Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (123 aa)    
Predicted Functional Partners:
D920_00967
Putative low molecular weight protein-tyrosine-phosphatase PtpA; KEGG: efu:HMPREF0351_10145 2.9e-51 protein-tyrosine-phosphatase K01104; Psort location: Cytoplasmic, score: 9.67; Belongs to the low molecular weight phosphotyrosine protein phosphatase family.
       0.995
D920_00968
Putative dihydroxyacetone kinase regulator; KEGG: bha:BH3415 0.00070 NADH dehydrogenase; K03885 NADH dehydrogenase; Psort location: Cytoplasmic, score: 7.50.
       0.995
ruvB
Holliday junction DNA helicase RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
       0.995
ruvA
Holliday junction DNA helicase RuvA; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing. RuvA stimulates, in the presence of DNA, the weak ATPase activity of RuvB.
       0.995
D920_01534
Putative proton-coupled thiamine transporter YuaJ; Psort location: CytoplasmicMembrane, score: 10.00.
       0.975
msrB
methionine-R-sulfoxide reductase; KEGG: efu:HMPREF0351_10140 2.5e-61 msrB; peptide-methionine (R)-S-oxide reductase K07305; Psort location: Cytoplasmic, score: 7.50.
       0.945
D920_03124
KEGG: efc:EFAU004_01412 2.3e-145 N-acetylmuramoyl-L-alanine amidase; Psort location: Extracellular, score: 9.73.
       0.890
D920_02397
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.853
D920_02739
KEGG: efu:HMPREF0351_11839 3.2e-68 tag; DNA-3-methyladenine glycosylase I K01246.
       0.833
D920_02385
KEGG: efc:EFAU004_00891 3.1e-182 cyclopropane-fatty-acyl-phospholipid synthase K00574; Psort location: Cytoplasmic, score: 9.67.
       0.784
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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