Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_00980Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (170 aa)    
Predicted Functional Partners:
D920_00978
Hypothetical protein; KEGG: efu:HMPREF0351_12771 3.9e-15 DNA-directed DNA polymerase K03502.
       0.980
D920_00979
ImpB/MucB/SamB family protein; KEGG: efc:EFAU004_00480 1.6e-167 DNA directed DNA polymerase K03502; Psort location: Cytoplasmic, score: 7.50; Belongs to the DNA polymerase type-Y family.
       0.980
D920_00981
Hypothetical protein.
       0.971
D920_00387
Hypothetical protein.
       0.880
D920_02251
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50; Belongs to the SOS response-associated peptidase family.
       0.867
dinB
Putative DNA polymerase IV; Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII.
       0.768
D920_02059
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.767
D920_00326
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.698
D920_00977
Hypothetical protein.
       0.507
galK
Galactokinase; Catalyzes the transfer of the gamma-phosphate of ATP to D- galactose to form alpha-D-galactose-1-phosphate (Gal-1-P). Belongs to the GHMP kinase family. GalK subfamily.
       0.467
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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