Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01009Hypothetical protein. (136 aa)    
Predicted Functional Partners:
D920_01770
KEGG: efc:EFAU004_00424 0. ABC transporter ATP-binding protein/permease; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.844
D920_02433
RDD family protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
   
 0.739
D920_00015
Topology modulation domain protein.
       0.727
D920_01780
Efflux ABC transporter, permease protein; KEGG: efu:HMPREF0351_10749 3.4e-18 ABC superfamily ATP binding cassette transporter, membrane protein K02004; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.726
D920_01907
Efflux ABC transporter, permease protein; KEGG: efu:HMPREF0351_10749 4.6e-22 ABC superfamily ATP binding cassette transporter, membrane protein K02004; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.726
D920_02000
Hypothetical protein.
  
     0.712
D920_02993
Putative neutral zinc metallopeptidase; KEGG: efc:EFAU004_02238 6.5e-102 Zn-dependent protease K06973; Psort location: CytoplasmicMembrane, score: 10.00.
       0.693
D920_01788
Efflux ABC transporter, permease protein; KEGG: sgg:SGGBAA2069_c11620 3.4e-144 putative ABC transporter permease K02004; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.686
D920_02143
Efflux ABC transporter, permease protein; KEGG: ljf:FI9785_1686 1.1e-49 ABC transporter permease K02004; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.686
D920_01010
Putative phosphoesterase; KEGG: efc:EFAU004_00152 2.4e-118 Calcineurin-like phosphoesterase; Psort location: Cytoplasmic, score: 7.50.
 
    0.685
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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