D920_01022 protein (Enterococcus faecalis 13SDW01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

D920_01022

KEGG: bcz:BCZK3833 1.3e-09 GntR family transcriptional regulator K07979; Psort location: CytoplasmicMembrane, score: 9.55. (132 aa)

Predicted Functional Partners:

D920_01023

0.999

D920_01024

0.988

D920_01579

0.935

D920_00957

0.926

D920_00271

0.923

D920_00609

0.917

D920_01403

0.911

D920_01779

0.911

D920_01906

0.911

D920_00809

0.901

Your Current Organism:

Enterococcus faecalis 13SDW01

NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
D920_00271	D920_00609	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: lbh:Lbuc_2261 1.9e-88 Fe(3+)-transporting ATPase; Psort location: CytoplasmicMembrane, score: 8.78.	0.830
D920_00271	D920_00809	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; KEGG: efc:EFAU004_01232 4.4e-286 ysyl-tRNA synthetase K14205; Psort location: CytoplasmicMembrane, score: 10.00.	0.690
D920_00271	D920_01022	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: bcz:BCZK3833 1.3e-09 GntR family transcriptional regulator K07979; Psort location: CytoplasmicMembrane, score: 9.55.	0.923
D920_00271	D920_01023	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: llk:LLKF_0294 2.4e-72 ABC transporter ATP-binding protein K01990; Psort location: CytoplasmicMembrane, score: 9.51.	0.760
D920_00271	D920_01403	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: efi:OG1RF_12114 1.6e-91 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.437
D920_00271	D920_01579	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	Nitroreductase family protein; KEGG: efu:HMPREF0351_12619 1.3e-89 NADH dehydrogenase; Psort location: Cytoplasmic, score: 9.97.	0.620
D920_00271	D920_01779	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_10446 1.7e-108 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.437
D920_00271	D920_01906	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_10446 1.4e-120 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.437
D920_00609	D920_00271	ABC transporter, ATP-binding protein; KEGG: lbh:Lbuc_2261 1.9e-88 Fe(3+)-transporting ATPase; Psort location: CytoplasmicMembrane, score: 8.78.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.830
D920_00609	D920_01022	ABC transporter, ATP-binding protein; KEGG: lbh:Lbuc_2261 1.9e-88 Fe(3+)-transporting ATPase; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: bcz:BCZK3833 1.3e-09 GntR family transcriptional regulator K07979; Psort location: CytoplasmicMembrane, score: 9.55.	0.917
D920_00609	D920_01023	ABC transporter, ATP-binding protein; KEGG: lbh:Lbuc_2261 1.9e-88 Fe(3+)-transporting ATPase; Psort location: CytoplasmicMembrane, score: 8.78.	KEGG: llk:LLKF_0294 2.4e-72 ABC transporter ATP-binding protein K01990; Psort location: CytoplasmicMembrane, score: 9.51.	0.413
D920_00609	D920_01403	ABC transporter, ATP-binding protein; KEGG: lbh:Lbuc_2261 1.9e-88 Fe(3+)-transporting ATPase; Psort location: CytoplasmicMembrane, score: 8.78.	ABC transporter, ATP-binding protein; KEGG: efi:OG1RF_12114 1.6e-91 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.510
D920_00609	D920_01579	ABC transporter, ATP-binding protein; KEGG: lbh:Lbuc_2261 1.9e-88 Fe(3+)-transporting ATPase; Psort location: CytoplasmicMembrane, score: 8.78.	Nitroreductase family protein; KEGG: efu:HMPREF0351_12619 1.3e-89 NADH dehydrogenase; Psort location: Cytoplasmic, score: 9.97.	0.537
D920_00609	D920_01779	ABC transporter, ATP-binding protein; KEGG: lbh:Lbuc_2261 1.9e-88 Fe(3+)-transporting ATPase; Psort location: CytoplasmicMembrane, score: 8.78.	ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_10446 1.7e-108 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.875
D920_00609	D920_01906	ABC transporter, ATP-binding protein; KEGG: lbh:Lbuc_2261 1.9e-88 Fe(3+)-transporting ATPase; Psort location: CytoplasmicMembrane, score: 8.78.	ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_10446 1.4e-120 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.582
D920_00809	D920_00271	Hypothetical protein; KEGG: efc:EFAU004_01232 4.4e-286 ysyl-tRNA synthetase K14205; Psort location: CytoplasmicMembrane, score: 10.00.	Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.	0.690
D920_00809	D920_00957	Hypothetical protein; KEGG: efc:EFAU004_01232 4.4e-286 ysyl-tRNA synthetase K14205; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: efu:HMPREF0351_10155 5.6e-80 Sir2 family transcriptional regulator K12410; Psort location: Cytoplasmic, score: 7.50.	0.736
D920_00809	D920_01022	Hypothetical protein; KEGG: efc:EFAU004_01232 4.4e-286 ysyl-tRNA synthetase K14205; Psort location: CytoplasmicMembrane, score: 10.00.	KEGG: bcz:BCZK3833 1.3e-09 GntR family transcriptional regulator K07979; Psort location: CytoplasmicMembrane, score: 9.55.	0.901
D920_00809	D920_01403	Hypothetical protein; KEGG: efc:EFAU004_01232 4.4e-286 ysyl-tRNA synthetase K14205; Psort location: CytoplasmicMembrane, score: 10.00.	ABC transporter, ATP-binding protein; KEGG: efi:OG1RF_12114 1.6e-91 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.	0.741
D920_00809	D920_01579	Hypothetical protein; KEGG: efc:EFAU004_01232 4.4e-286 ysyl-tRNA synthetase K14205; Psort location: CytoplasmicMembrane, score: 10.00.	Nitroreductase family protein; KEGG: efu:HMPREF0351_12619 1.3e-89 NADH dehydrogenase; Psort location: Cytoplasmic, score: 9.97.	0.900