Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01024Hypothetical protein; KEGG: efi:OG1RF_11387 2.5e-11 brp/Blh family beta-carotene 15,15'-monooxygenase; Psort location: CytoplasmicMembrane, score: 10.00. (249 aa)    
Predicted Functional Partners:
D920_01023
KEGG: llk:LLKF_0294 2.4e-72 ABC transporter ATP-binding protein K01990; Psort location: CytoplasmicMembrane, score: 9.51.
  
  
 0.991
D920_01022
KEGG: bcz:BCZK3833 1.3e-09 GntR family transcriptional regulator K07979; Psort location: CytoplasmicMembrane, score: 9.55.
     
 0.988
D920_01780
Efflux ABC transporter, permease protein; KEGG: efu:HMPREF0351_10749 3.4e-18 ABC superfamily ATP binding cassette transporter, membrane protein K02004; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.886
D920_01907
Efflux ABC transporter, permease protein; KEGG: efu:HMPREF0351_10749 4.6e-22 ABC superfamily ATP binding cassette transporter, membrane protein K02004; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.886
D920_03071
KEGG: bya:BANAU_2956 1.1e-12 ytrA; GntR family transcriptional regulator; Psort location: CytoplasmicMembrane, score: 8.16.
     
 0.869
D920_00513
Hypothetical protein.
     
 0.856
D920_01403
ABC transporter, ATP-binding protein; KEGG: efi:OG1RF_12114 1.6e-91 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
     
 0.856
D920_01779
ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_10446 1.7e-108 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
     
 0.856
D920_01906
ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_10446 1.4e-120 ABC superfamily ATP binding cassette transporter, ABC protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
     
 0.856
D920_00905
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.721
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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