Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
D920_01111KEGG: efc:EFAU004_00077 3.1e-189 pdp; pyrimidine-nucleoside phosphorylase K00756; Psort location: Cytoplasmic, score: 7.50. (453 aa)    
Predicted Functional Partners:
deoB
Phosphopentomutase; Phosphotransfer between the C1 and C5 carbon atoms of pentose; Belongs to the phosphopentomutase family.
 
  
 0.999
D920_01108
Basic membrane protein; KEGG: apb:SAR116_1606 1.3e-30 membrane lipoprotein K07335.
     
 0.999
D920_01109
Cytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family.
  
 0.999
deoC
Deoxyribose-phosphate aldolase; Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy-D-ribose 5- phosphate; Belongs to the DeoC/FbaB aldolase family. DeoC type 1 subfamily.
 
 
 0.999
D920_01107
ABC transporter, ATP-binding protein; KEGG: efu:HMPREF0351_10042 6.5e-244 ABC superfamily ATP binding cassette transporter, ABC protein K02056; Psort location: CytoplasmicMembrane, score: 9.96.
     
 0.997
D920_01112
KEGG: hor:Hore_04570 1.4e-53 LacI family transcriptional regulator K02529; Psort location: Cytoplasmic, score: 9.97.
     
 0.996
D920_02132
Pyrimidine nucleoside transport protein; Psort location: CytoplasmicMembrane, score: 10.00.
  
  
 0.996
deoD
KEGG: efu:HMPREF0351_10047 1.5e-102 deoD2; purine-nucleoside phosphorylase K03784; Psort location: Cytoplasmic, score: 9.97.
  
  
 0.995
D920_01105
Branched-chain amino acid ABC transporter, permease protein; KEGG: mdi:METDI2374 5.3e-36 ABC transporter permease K02057; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family.
     
 0.992
D920_01106
Branched-chain amino acid ABC transporter, permease protein; KEGG: pfe:PSF113_0699 1.3e-41 ABC transporter permease K02057; Psort location: CytoplasmicMembrane, score: 10.00; Belongs to the binding-protein-dependent transport system permease family.
     
 0.992
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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