Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_01118Hypothetical protein. (239 aa)    
Predicted Functional Partners:
D920_01117
DNA-binding helix-turn-helix protein; KEGG: mla:Mlab_1603 4.4e-12 adenine deaminase K01486; Psort location: Cytoplasmic, score: 7.50.
     
 0.998
D920_00191
Putative toxin-antitoxin system, toxin component; Psort location: Cytoplasmic, score: 7.50.
     
 0.845
D920_01143
Putative toxin-antitoxin system, toxin component; KEGG: bme:BMEI1683 0.0018 zinc-dependent metallopeptidase K01417; Psort location: Cytoplasmic, score: 7.50.
     
 0.845
D920_01207
Putative toxin-antitoxin system, toxin component.
     
 0.845
D920_01489
Putative toxin-antitoxin system, toxin component; Psort location: Cytoplasmic, score: 7.50.
     
 0.845
D920_01918
Putative toxin-antitoxin system, toxin component.
     
 0.845
D920_02043
Putative toxin-antitoxin system, toxin component; Psort location: Cytoplasmic, score: 7.50.
     
 0.845
D920_00549
KEGG: apb:SAR116_1706 4.7e-12 DNA-binding protein; Psort location: Cytoplasmic, score: 7.50.
     
 0.677
D920_00026
DNA-binding helix-turn-helix protein; KEGG: kra:Krad_1361 9.2e-05 3-phosphoshikimate 1-carboxyvinyltransferase; K00790 UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Psort location: Cytoplasmic, score: 7.50.
     
 0.551
D920_00192
DNA-binding helix-turn-helix protein; KEGG: mpx:MPD5_0532 1.8e-10 SOS-response repressor and protease LexA; Psort location: Cytoplasmic, score: 7.50.
     
 0.551
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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