Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01123Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55. (72 aa)    
Predicted Functional Partners:
D920_01124
Hypothetical protein; KEGG: edi:EDI_341030 0.00049 intracellular protein transport protein USO1.
       0.978
D920_01122
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.974
D920_01121
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.794
D920_01125
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.724
D920_01944
Hypothetical protein.
       0.629
D920_01127
DNA-binding helix-turn-helix protein; KEGG: fnu:FN0522 0.00098 exonuclease SbcC K03546; Psort location: Cytoplasmic, score: 7.50.
       0.591
D920_00217
Peptidase, M23 family; KEGG: efu:HMPREF0351_12843 1.6e-185 lysozyme; Psort location: CytoplasmicMembrane, score: 9.55.
       0.568
D920_00510
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
       0.532
D920_01126
Phi-29-like late activator; Psort location: Cytoplasmic, score: 7.50.
       0.523
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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