Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01144Hypothetical protein. (125 aa)    
Predicted Functional Partners:
D920_01145
Caspase domain protein; KEGG: ase:ACPL_6936 2.6e-09 putative ATP-dependent helicase; Psort location: CytoplasmicMembrane, score: 9.55.
 
     0.996
D920_02439
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0398 family.
       0.774
ychF
GTP-binding protein YchF; ATPase that binds to both the 70S ribosome and the 50S ribosomal subunit in a nucleotide-independent manner.
       0.723
D920_01520
KEGG: efc:EFAU004_02618 2.5e-242 serine/threonine-protein kinase K08884; Psort location: CytoplasmicMembrane, score: 8.78.
       0.717
D920_00474
Na+/H+ antiporter NhaC; Psort location: CytoplasmicMembrane, score: 10.00.
       0.696
D920_01146
Restriction endonuclease; Psort location: Cytoplasmic, score: 7.50.
       0.678
D920_00377
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.673
D920_02038
Hypothetical protein; KEGG: abs:AZOBR_p350037 0.00072 norB; nitric oxide reductase (NOR), large subunit; K04561 nitric oxide reductase subunit B; Psort location: CytoplasmicMembrane, score: 10.00.
       0.673
D920_02354
DNA-binding protein; Psort location: Cytoplasmic, score: 7.50.
       0.618
D920_00181
Protein hit; KEGG: efc:EFAU004_02524 6.1e-58 histidine triad protein K02503; Psort location: Cytoplasmic, score: 7.50.
       0.609
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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