Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01152Hypothetical protein; KEGG: edi:EDI_341030 5.6e-13 intracellular protein transport protein USO1. (318 aa)    
Predicted Functional Partners:
D920_01150
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.471
D920_01151
KEGG: efu:HMPREF0351_12646 2.1e-103 bcrA; bacitracin ABC superfamily ATP binding cassette transporter, ABC protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.
       0.471
D920_01149
Response regulator receiver domain protein; KEGG: pme:NATL1_11471 2.4e-33 phoB; two-component response regulator, phosphate K07657; Psort location: Cytoplasmic, score: 9.97.
       0.468
D920_01153
ABC transporter, ATP-binding protein; KEGG: dca:Desca_0391 7.3e-126 xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.
       0.457
D920_01154
ABC transporter, ATP-binding protein; KEGG: efi:OG1RF_11766 5.3e-194 multidrug ABC superfamily ATP binding cassette transporter, ABC protein K06147; Psort location: CytoplasmicMembrane, score: 10.00.
       0.457
D920_01148
KEGG: efc:EFAU004_02694 6.8e-75 sensor histidine kinase.
       0.451
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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