Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_01181Transcriptional regulator, PadR family; KEGG: ase:ACPL_2208 0.0099 Coproporphyrinogen 3 oxidase, aerobic; Psort location: Cytoplasmic, score: 7.50. (109 aa)    
Predicted Functional Partners:
D920_01182
Hypothetical protein; KEGG: mfs:MFS40622_1065 0.0074 DEAD/H associated domain protein; K03724 ATP-dependent helicase Lhr and Lhr-like helicase; Psort location: CytoplasmicMembrane, score: 9.55.
 
  
 0.999
D920_01184
Putative ABC transporter; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.998
D920_01183
KEGG: fal:FRAAL2549 9.3e-55 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.
 
  
 0.982
D920_01394
Methyltransferase domain protein; KEGG: efc:EFAU004_00735 1.1e-97 O-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
     
 0.968
D920_01176
KEGG: fal:FRAAL2549 1.9e-56 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.99.
  
  
 0.960
D920_01398
Lipoyltransferase and lipoate-protein ligase; KEGG: efu:HMPREF0351_10758 1.5e-150 lplA; lipoate--protein ligase K03800; Psort location: Cytoplasmic, score: 9.97.
     
 0.959
D920_01399
Metallo-beta-lactamase domain protein; KEGG: efu:HMPREF0351_10757 3.0e-104 metal-dependent hydrolase; Psort location: Cytoplasmic, score: 7.50.
       0.953
D920_01003
Hypothetical protein; KEGG: efu:HMPREF0351_10125 4.5e-30 metG; methionine--tRNA ligase.
       0.950
D920_00323
KEGG: fal:FRAAL2549 2.1e-57 antibiotic resistance ATP-binding protein K09687; Psort location: CytoplasmicMembrane, score: 9.96.
  
  
 0.948
D920_01178
Hypothetical protein; Psort location: CytoplasmicMembrane, score: 10.00.
 
  
 0.948
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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