Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01219Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.55. (100 aa)    
Predicted Functional Partners:
D920_01220
Hypothetical protein.
       0.581
D920_01218
Hypothetical protein; KEGG: bcy:Bcer98_0572 0.0063 undecaprenyl pyrophosphate phosphatase K06153; Psort location: CytoplasmicMembrane, score: 10.00.
       0.578
D920_00898
Glycosyl hydrolase, family 88; KEGG: efu:HMPREF0351_10205 1.1e-193 glycosyl hydrolase; K15532 unsaturated rhamnogalacturonyl hydrolase; Psort location: Cytoplasmic, score: 9.97.
       0.441
D920_00896
TRAP transporter, DctQ-like membrane protein; KEGG: apb:SAR116_0248 1.5e-06 C4-dicarboxylate transport system, permease small protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.419
D920_00897
TRAP transporter solute receptor, DctP family; KEGG: cnc:CNE_2c21430 6.2e-26 dhaT; 1,3-propanediol dehydrogenase DhaT; Psort location: Cytoplasmic, score: 7.50.
       0.419
D920_00895
TRAP transporter, DctM subunit; KEGG: apb:SAR116_0249 2.3e-67 TRAP dicarboxylate transporter subunit DctM; Psort location: CytoplasmicMembrane, score: 10.00.
       0.411
D920_00901
KEGG: efu:HMPREF0351_10204 0. aad; aldehyde-alcohol dehydrogenase K04072; Psort location: Cytoplasmic, score: 9.97; In the C-terminal section; belongs to the iron-containing alcohol dehydrogenase family.
       0.409
D920_00894
KEGG: efc:EFAU004_00244 2.1e-103 AP endonuclease; Psort location: Cytoplasmic, score: 7.50.
       0.404
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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