Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
D920_01249RNA-binding protein, YhbY family; Psort location: Cytoplasmic, score: 7.50. (102 aa)    
Predicted Functional Partners:
D920_01245
Methyltransferase domain protein; KEGG: efi:OG1RF_12171 1.9e-104 methyltransferase; Psort location: CytoplasmicMembrane, score: 8.16.
 
  
 0.999
rsfS
Iojap-like protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
  
 0.999
D920_01247
Hydrolase, HD family; KEGG: sgg:SGGBAA2069_c18170 3.7e-51 HD domain-containing protein; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.999
nadD
Nicotinate-nucleotide adenylyltransferase; Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD).
  
  
 0.999
D920_01250
Ribosome biogenesis GTPase YqeH; KEGG: ssr:SALIVB_1731 6.9e-137 nitric-oxide synthase (GTPase) K06948; Psort location: Cytoplasmic, score: 7.50.
  
  
 0.999
D920_01251
KEGG: efc:EFAU004_01314 1.2e-77 HAD superfamily hydrolase K07015.
  
  
 0.999
tmcAL
Hypothetical protein; Catalyzes the formation of N(4)-acetylcytidine (ac(4)C) at the wobble position of elongator tRNA(Met), using acetate and ATP as substrates. First activates an acetate ion to form acetyladenylate (Ac- AMP) and then transfers the acetyl group to tRNA to form ac(4)C34.
 
   
 0.996
D920_01243
DNA-binding regulatory protein, YebC/PmpR family; KEGG: efi:OG1RF_12169 2.6e-105 yeeN; glucose-1-phosphate adenylyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.993
aroE
Shikimate dehydrogenase; Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA).
  
    0.985
rph
tRNA nucleotidyltransferase; Phosphorolytic 3'-5' exoribonuclease that plays an important role in tRNA 3'-end maturation. Removes nucleotide residues following the 3'-CCA terminus of tRNAs; can also add nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates, but this may not be physiologically important. Probably plays a role in initiation of 16S rRNA degradation (leading to ribosome degradation) during starvation.
     
 0.985
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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