Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01279Hypothetical protein; KEGG: mpu:MYPU_1770 4.5e-25 cysS; cysteinyl-tRNA synthetase (cysteine--tRNA ligase) K01883; Psort location: Cytoplasmic, score: 9.97; Belongs to the UPF0374 family. (177 aa)    
Predicted Functional Partners:
D920_01280
A/G-specific adenine glycosylase; Adenine glycosylase active on G-A mispairs.
 
     0.995
recX
Regulatory protein RecX; Modulates RecA activity; Belongs to the RecX family.
       0.995
D920_00941
Hypothetical protein.
 
     0.976
D920_00601
KEGG: efc:EFAU004_02112 8.3e-102 N-acetylmuramoyl-L-alanine amidase K01448; Psort location: Cellwall, score: 8.75.
       0.971
D920_00707
Hypothetical protein; KEGG: lki:LKI_01225 2.0e-20 LexA repressor K09976; Psort location: CytoplasmicMembrane, score: 9.55.
 
    0.971
D920_02203
Signal peptidase I; KEGG: efu:HMPREF0351_12299 1.8e-83 sipA; Sec family Type I general secretory pathway S26 family signal peptidase K03100; Psort location: Cellwall, score: 8.76.
     
 0.964
D920_01282
KEGG: efc:EFAU004_01343 1.9e-205 23S rRNA (uracil-5-)-methyltransferase; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.962
D920_03109
KEGG: gym:GYMC10_0856 3.1e-86 iron-sulfur cluster-binding protein; Psort location: CytoplasmicMembrane, score: 8.16.
       0.952
folE
GTP cyclohydrolase I; KEGG: efa:EF3267 1.2e-54 folE; GTP cyclohydrolase I K01495; Psort location: Cytoplasmic, score: 7.50.
       0.948
D920_01996
KEGG: efc:EFAU004_01650 8.3e-189 23S rRNA (uracil-5-)-methyltransferase K03215; Psort location: Cytoplasmic, score: 7.50; Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family.
       0.902
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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