Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01345Hypothetical protein; Psort location: CytoplasmicMembrane, score: 9.87. (118 aa)    
Predicted Functional Partners:
sfsA
KEGG: pfe:PSF113_4985 1.3e-23 Sugar/maltose fermentation stimulation protein A K06206; Psort location: Cytoplasmic, score: 7.50; Belongs to the SfsA family.
       0.995
D920_01343
Oxidoreductase, NAD-binding domain protein; KEGG: efc:EFAU004_00781 3.8e-152 oxidoreductase family, NAD-binding Rossmann fold protein; Psort location: Cytoplasmic, score: 7.50.
       0.986
D920_01342
DEAD/DEAH box helicase; KEGG: thl:TEH_16770 6.6e-109 putative RNA helicase; Psort location: Cytoplasmic, score: 9.97.
       0.983
D920_01341
KEGG: cdl:CDR20291_0788 4.0e-118 sigma-54 factor, interaction domain-containing protein,transcriptional regulatory protein levr; Psort location: Cytoplasmic, score: 9.95.
       0.955
D920_01346
Iron dependent repressor, DNA binding domain protein; Psort location: Cytoplasmic, score: 9.97.
 
     0.955
zwf
Glucose-6-phosphate dehydrogenase; Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone.
       0.938
D920_00246
Sigma-54 interaction domain protein; KEGG: ppo:PPM_0442 5.0e-95 levR; transcriptional regulatory protein levR; Psort location: Cytoplasmic, score: 9.97.
       0.928
D920_01384
KEGG: efi:OG1RF_10017 2.1e-293 levR; transcriptional regulatory protein LevR; Psort location: Cytoplasmic, score: 9.97.
       0.928
D920_03023
Sigma-54 interaction domain protein; KEGG: ppo:PPM_0442 8.4e-93 levR; transcriptional regulatory protein levR; Psort location: Cytoplasmic, score: 9.97.
       0.928
D920_02703
Serine-type D-Ala-D-Ala carboxypeptidase; KEGG: efu:HMPREF0351_11904 4.5e-181 dacA; S11 family D-Ala-D-Ala carboxypeptidase K07258; Psort location: CytoplasmicMembrane, score: 10.00.
       0.925
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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