Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01396Hypothetical protein; KEGG: chu:CHU_3468 0.0011 arcB; sensor histidine kinase K00936; Psort location: CytoplasmicMembrane, score: 10.00. (612 aa)    
Predicted Functional Partners:
D920_01395
Signal peptidase I; KEGG: efu:HMPREF0351_10760 1.2e-47 spsB; signal peptidase I K13280; Psort location: CytoplasmicMembrane, score: 10.00.
 
     0.994
D920_01394
Methyltransferase domain protein; KEGG: efc:EFAU004_00735 1.1e-97 O-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
       0.949
D920_02849
LytTr DNA-binding domain protein; KEGG: sgg:SGGBAA2069_c19630 1.4e-06 fasA1; response regulator; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.930
D920_02217
LytTr DNA-binding domain protein; KEGG: sgg:SGGBAA2069_c19630 1.9e-15 fasA1; response regulator; Psort location: Cytoplasmic, score: 9.67.
 
  
 0.928
D920_00897
TRAP transporter solute receptor, DctP family; KEGG: cnc:CNE_2c21430 6.2e-26 dhaT; 1,3-propanediol dehydrogenase DhaT; Psort location: Cytoplasmic, score: 7.50.
     
 0.924
D920_01792
Putative accessory protein regulator protein A; KEGG: sgg:SGGBAA2069_c19630 1.7e-23 fasA1; response regulator; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.884
D920_01794
KEGG: efc:EFAU004_00453 4.7e-67 accessory regulator agrBfs protein K07813; Psort location: CytoplasmicMembrane, score: 10.00.
       0.870
D920_01810
KEGG: sgg:SGGBAA2069_c05640 1.7e-07 fasA; Chemotaxis response regulator protein K07707; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.866
D920_00440
LytTr DNA-binding domain protein; KEGG: sgg:SGGBAA2069_c05640 0.00011 fasA; Chemotaxis response regulator protein K07707; Psort location: Cytoplasmic, score: 7.50.
 
  
 0.863
D920_02761
LytTr DNA-binding domain protein; KEGG: sgg:SGGBAA2069_c19630 6.3e-17 fasA1; response regulator; Psort location: Cytoplasmic, score: 9.97.
 
  
 0.856
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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