Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01446Hypothetical protein. (174 aa)    
Predicted Functional Partners:
miaA
tRNA dimethylallyltransferase; Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A); Belongs to the IPP transferase family.
       0.997
D920_01444
KEGG: efc:EFAU004_02190 4.1e-84 glycerophosphodiester phosphodiesterase family protein K01126; Psort location: Cytoplasmic, score: 9.97.
       0.997
hflX
GTP-binding protein HflX; GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis. Belongs to the TRAFAC class OBG-HflX-like GTPase superfamily. HflX GTPase family.
       0.995
clpP
ATP-dependent Clp endopeptidase, proteolytic subunit ClpP; Cleaves peptides in various proteins in a process that requires ATP hydrolysis. Has a chymotrypsin-like activity. Plays a major role in the degradation of misfolded proteins. Belongs to the peptidase S14 family.
       0.995
D920_01439
KEGG: eci:UTI89_C3737 9.6e-05 zntR; zinc-responsive transcriptional regulator K13638; Psort location: Cytoplasmic, score: 9.97.
       0.985
D920_01438
KEGG: efc:EFAU004_00692 4.7e-234 glnA; glutamine synthetase, type I K01915; Psort location: Cytoplasmic, score: 9.97.
       0.971
D920_02042
TM2 domain protein; Psort location: CytoplasmicMembrane, score: 9.55.
       0.967
D920_01966
Hypothetical protein; KEGG: efc:EFAU004_01676 9.3e-55 bifunctional disulfide isomerase/thiol-disulfide oxidase; Psort location: Cytoplasmic, score: 7.50.
       0.953
D920_02057
Glycerophosphodiester phosphodiesterase family protein; KEGG: cmr:Cycma_4946 3.5e-23 glycerophosphoryl diester phosphodiesterase; K01126 glycerophosphoryl diester phosphodiesterase; Psort location: Cytoplasmic, score: 9.67.
       0.895
D920_01445
Hypothetical protein.
       0.773
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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