Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
rnjRibonuclease J 1; An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and/or decay. (559 aa)    
Predicted Functional Partners:
D920_01451
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50; Belongs to the UPF0356 family.
  
  
 0.998
D920_01450
ABC transporter, ATP-binding protein; KEGG: cle:Clole_4005 3.1e-182 xenobiotic-transporting ATPase K06147; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.995
rny
YmdA/YtgF family protein; Endoribonuclease that initiates mRNA decay. Belongs to the RNase Y family.
  
 
 0.991
D920_01448
Bacterial transferase hexapeptide repeat protein; KEGG: efc:EFAU004_02193 4.2e-66 Carbonic anhydrase/acetyltransferase.
       0.981
cinA
Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.5e-16 fadD; long-chain-fatty-acid--CoA ligase K03743; Belongs to the CinA family.
  
    0.977
D920_01449
ABC transporter, ATP-binding protein; KEGG: efi:OG1RF_12220 1.4e-255 mdlB2; multidrug ABC superfamily ATP binding cassette transporter, ABC protein K06147; Psort location: CytoplasmicMembrane, score: 10.00.
     
 0.974
pnp
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
  
 0.972
tsaD
Putative glycoprotease GCP; Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction; Belongs to the KAE1 / TsaD family.
 
     0.970
D920_02667
Universal bacterial protein YeaZ; KEGG: efu:HMPREF0351_11699 4.0e-93 M22 family O-sialoglycoprotein endopeptidase; Psort location: Cytoplasmic, score: 7.50.
     
 0.970
D920_02665
KEGG: efu:HMPREF0351_11697 1.0e-48 rimI; ribosomal-protein-alanine acetyltransferase K03789; Psort location: Cytoplasmic, score: 9.97; overlaps another CDS with the same product name.
     
 0.968
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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