Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
D920_01490Hypothetical protein; Psort location: Cytoplasmic, score: 7.50. (116 aa)    
Predicted Functional Partners:
D920_03076
Hypothetical protein.
       0.989
polA
DNA-directed DNA polymerase; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
       0.923
D920_01769
Hypothetical protein; Psort location: Cytoplasmic, score: 7.50.
 
     0.917
D920_01777
Hypothetical protein.
       0.904
aroA
3-phosphoshikimate 1-carboxyvinyltransferase; Catalyzes the transfer of the enolpyruvyl moiety of phosphoenolpyruvate (PEP) to the 5-hydroxyl of shikimate-3-phosphate (S3P) to produce enolpyruvyl shikimate-3-phosphate and inorganic phosphate.
       0.903
nagB
Glucosamine-6-phosphate deaminase; Catalyzes the reversible isomerization-deamination of glucosamine 6-phosphate (GlcN6P) to form fructose 6-phosphate (Fru6P) and ammonium ion.
       0.892
D920_02767
Hypothetical protein; KEGG: ssr:SALIVB_0941 1.3e-07 phosphopentomutase; Psort location: CytoplasmicMembrane, score: 9.55.
       0.890
D920_00770
KEGG: efc:EFAU004_01774 4.6e-243 glycerophosphodiester phosphodiesterase family protein K01126; Psort location: CytoplasmicMembrane, score: 10.00.
       0.889
D920_00473
KEGG: pfr:PFREUD_16470 5.3e-36 ubiG; 3-demethylubiquinone-9 3-methyltransferase; Psort location: Cytoplasmic, score: 7.50.
 
     0.887
D920_02147
PAP2 family protein; KEGG: efu:HMPREF0351_12532 1.5e-61 type 2 phosphatidic acid phosphatase; Psort location: CytoplasmicMembrane, score: 10.00.
       0.882
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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