Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
D920_01621Hypothetical protein. (159 aa)    
Predicted Functional Partners:
D920_01620
Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 4.3e-41 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 9.51.
       0.910
D920_01618
Bacteriocin-associated integral membrane protein; KEGG: pfa:PFL0475w 0.0025 PDE1; cGMP-specific phosphodiesterase K01120; Psort location: CytoplasmicMembrane, score: 10.00.
       0.905
D920_01619
DNA-binding helix-turn-helix protein; KEGG: lde:LDBND_0101 0.00042 peptidase s24-like protein; K01356 repressor LexA; Psort location: CytoplasmicMembrane, score: 8.16.
       0.737
D920_00491
Putative bacteriocin export ABC transporter; KEGG: llk:LLKF_0011 7.5e-53 yabE; ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
       0.638
D920_00492
Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.612
D920_01635
Bacteriocin-associated integral membrane protein; Psort location: CytoplasmicMembrane, score: 10.00.
       0.612
D920_01420
Putative lipoprotein releasing system, ATP-binding protein; KEGG: ppo:PPM_p0087 2.5e-36 metN4; methionine import ATP-binding protein metN; Psort location: CytoplasmicMembrane, score: 9.96.
       0.558
D920_02916
KEGG: snc:HMPREF0837_12256 5.9e-21 ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
       0.558
D920_02917
Hypothetical protein; KEGG: xbo:XBJ1_2840 3.3e-11 lolD; transporter of outer membrane lipoproteins (ABC superfamily, atp_bind); K09810 lipoprotein-releasing system ATP-binding protein; Psort location: CytoplasmicMembrane, score: 9.51.
       0.558
D920_03043
Putative bacteriocin export ABC transporter; KEGG: snc:HMPREF0837_12256 3.0e-40 ABC transporter ATP-binding protein K02003; Psort location: CytoplasmicMembrane, score: 8.78.
       0.558
Your Current Organism:
Enterococcus faecalis 13SDW01
NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01
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