D920_01708 protein (Enterococcus faecalis 13SDW01)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

D920_01708

Putative immunoglobulin-binding regulator B; Psort location: Cytoplasmic, score: 7.50. (174 aa)

Predicted Functional Partners:

D920_01707

0.998

D920_00174

0.993

D920_00392

0.993

cinA

0.989

rsmG

0.979

D920_00012

0.973

D920_00123

0.973

D920_00298

0.973

D920_00342

0.973

topA

0.967

Your Current Organism:

Enterococcus faecalis 13SDW01

NCBI taxonomy Id: 1260356
Other names: E. faecalis 13-SD-W-01, Enterococcus faecalis 13-SD-W-01

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
D920_00012	D920_00123	D920_00012	D920_00123	Hypothetical protein; KEGG: lbi:LEPBI_II0025 6.8e-07 ATPase, ParA family K03496.	Replication-associated protein RepB family protein; KEGG: ccm:Ccan_17350 1.2e-11 Sporulation initiation inhibitor protein soj K03496; Psort location: Cytoplasmic, score: 7.50.	0.475
D920_00012	D920_01708	D920_00012	D920_01708	Hypothetical protein; KEGG: lbi:LEPBI_II0025 6.8e-07 ATPase, ParA family K03496.	Putative immunoglobulin-binding regulator B; Psort location: Cytoplasmic, score: 7.50.	0.973
D920_00012	cinA	D920_00012	D920_01548	Hypothetical protein; KEGG: lbi:LEPBI_II0025 6.8e-07 ATPase, ParA family K03496.	Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.5e-16 fadD; long-chain-fatty-acid--CoA ligase K03743; Belongs to the CinA family.	0.952
D920_00012	rsmG	D920_00012	D920_00343	Hypothetical protein; KEGG: lbi:LEPBI_II0025 6.8e-07 ATPase, ParA family K03496.	16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.975
D920_00012	topA	D920_00012	D920_02859	Hypothetical protein; KEGG: lbi:LEPBI_II0025 6.8e-07 ATPase, ParA family K03496.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.944
D920_00123	D920_00012	D920_00123	D920_00012	Replication-associated protein RepB family protein; KEGG: ccm:Ccan_17350 1.2e-11 Sporulation initiation inhibitor protein soj K03496; Psort location: Cytoplasmic, score: 7.50.	Hypothetical protein; KEGG: lbi:LEPBI_II0025 6.8e-07 ATPase, ParA family K03496.	0.475
D920_00123	D920_01708	D920_00123	D920_01708	Replication-associated protein RepB family protein; KEGG: ccm:Ccan_17350 1.2e-11 Sporulation initiation inhibitor protein soj K03496; Psort location: Cytoplasmic, score: 7.50.	Putative immunoglobulin-binding regulator B; Psort location: Cytoplasmic, score: 7.50.	0.973
D920_00123	cinA	D920_00123	D920_01548	Replication-associated protein RepB family protein; KEGG: ccm:Ccan_17350 1.2e-11 Sporulation initiation inhibitor protein soj K03496; Psort location: Cytoplasmic, score: 7.50.	Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.5e-16 fadD; long-chain-fatty-acid--CoA ligase K03743; Belongs to the CinA family.	0.952
D920_00123	rsmG	D920_00123	D920_00343	Replication-associated protein RepB family protein; KEGG: ccm:Ccan_17350 1.2e-11 Sporulation initiation inhibitor protein soj K03496; Psort location: Cytoplasmic, score: 7.50.	16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.953
D920_00123	topA	D920_00123	D920_02859	Replication-associated protein RepB family protein; KEGG: ccm:Ccan_17350 1.2e-11 Sporulation initiation inhibitor protein soj K03496; Psort location: Cytoplasmic, score: 7.50.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.944
D920_00174	D920_01707	D920_00174	D920_01707	Hypothetical protein; KEGG: asd:AS9A_1188 0.0017 cysD; putative sulfate adenylyltransferase subunit 2; K00957 sulfate adenylyltransferase subunit 2.	Hypothetical protein.	0.806
D920_00174	D920_01708	D920_00174	D920_01708	Hypothetical protein; KEGG: asd:AS9A_1188 0.0017 cysD; putative sulfate adenylyltransferase subunit 2; K00957 sulfate adenylyltransferase subunit 2.	Putative immunoglobulin-binding regulator B; Psort location: Cytoplasmic, score: 7.50.	0.993
D920_00298	D920_01708	D920_00298	D920_01708	Hypothetical protein; KEGG: ccm:Ccan_17350 2.1e-18 Sporulation initiation inhibitor protein soj K03496; Psort location: Cytoplasmic, score: 7.50.	Putative immunoglobulin-binding regulator B; Psort location: Cytoplasmic, score: 7.50.	0.973
D920_00298	cinA	D920_00298	D920_01548	Hypothetical protein; KEGG: ccm:Ccan_17350 2.1e-18 Sporulation initiation inhibitor protein soj K03496; Psort location: Cytoplasmic, score: 7.50.	Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.5e-16 fadD; long-chain-fatty-acid--CoA ligase K03743; Belongs to the CinA family.	0.952
D920_00298	rsmG	D920_00298	D920_00343	Hypothetical protein; KEGG: ccm:Ccan_17350 2.1e-18 Sporulation initiation inhibitor protein soj K03496; Psort location: Cytoplasmic, score: 7.50.	16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.953
D920_00298	topA	D920_00298	D920_02859	Hypothetical protein; KEGG: ccm:Ccan_17350 2.1e-18 Sporulation initiation inhibitor protein soj K03496; Psort location: Cytoplasmic, score: 7.50.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.944
D920_00342	D920_01708	D920_00342	D920_01708	KEGG: ccm:Ccan_17350 9.5e-69 Sporulation initiation inhibitor protein soj K03496; Psort location: CytoplasmicMembrane, score: 8.78.	Putative immunoglobulin-binding regulator B; Psort location: Cytoplasmic, score: 7.50.	0.973
D920_00342	cinA	D920_00342	D920_01548	KEGG: ccm:Ccan_17350 9.5e-69 Sporulation initiation inhibitor protein soj K03496; Psort location: CytoplasmicMembrane, score: 8.78.	Competence/damage-inducible protein CinA domain protein; KEGG: cco:CCC13826_0279 1.5e-16 fadD; long-chain-fatty-acid--CoA ligase K03743; Belongs to the CinA family.	0.952
D920_00342	rsmG	D920_00342	D920_00343	KEGG: ccm:Ccan_17350 9.5e-69 Sporulation initiation inhibitor protein soj K03496; Psort location: CytoplasmicMembrane, score: 8.78.	16S rRNA methyltransferase GidB; Specifically methylates the N7 position of a guanine in 16S rRNA; Belongs to the methyltransferase superfamily. RNA methyltransferase RsmG family.	0.999
D920_00342	topA	D920_00342	D920_02859	KEGG: ccm:Ccan_17350 9.5e-69 Sporulation initiation inhibitor protein soj K03496; Psort location: CytoplasmicMembrane, score: 8.78.	DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...]	0.944